A sample version of an OMOP compliant input file for the Data Cycle Changes data quality module. This exact file is also included as a CSV in the package if the user wishes to use it, or the structure can be copied to produce a custom list of checks.
Format
dc_input_omop
A dataframe or CSV file with 8 columns
- schema_current
The schema where the data reflecting the current data model version is kept. Use
cdmto use the pre-configuredcdm_schema,resultto use the preconfiguredresults_schema, or input the exact name of the schema.- table_current
The name of the CDM or pre-computed results table to be used to retrieve the counts associated with the current data model
- schema_prev
ONLY REQUIRED IF PREV_CT_SRC = CDM; The schema where the data reflecting the previous data model version is kept. Use
cdmto use the pre-configuredcdm_schema,resultto use the preconfiguredresults_schema, or input the exact name of the schema.- table_prev
ONLY REQUIRED IF PREV_CT_SRC = CDM; The name of the CDM or pre-computed results table to be used to retrieve the counts associated with the previous data model
- filter_logic
OPTIONAL The logic that should be applied to BOTH table_current and table_prev in order to tailor the tables to the desired check assessment
- check_domain
A string indicating the domain of the check (ex: drug_exposure, prescription_drugs)
- check_id
A short string "code" used to identify the specific check (ex: de, de_rx)
- check_description
A longer description of the check (ex: full drug_exposure table, prescribed drugs based on drug_type_concept_id)